#priority category defined glossary_index concept
1 basic (defined) 4.10 Branch Support
1 basic (defined) 4.100 Trait
1 basic (defined) 4.103 Tree
1 basic (defined) 4.104 Unresolved
1 basic (defined) 4.11 Character
1 basic (defined) 4.12 Character-State
1 basic (defined) 4.13 Character-State Data Matrix
1 basic (defined) 4.15 Cladogram
1 basic (defined) 4.21 Derived
1 basic (defined) 4.22 Descendant
1 basic (defined) 4.23 Dichotomy
1 basic (defined) 4.27 Edge
1 basic (defined) 4.3 Ancestor
1 basic (defined) 4.30 Fully Resolved
1 basic (defined) 4.31 Gap
1 basic (defined) 4.35 Homology
1 basic (defined) 4.39 HTU
1 basic (defined) 4.4 Apomorphy
1 basic (defined) 4.40 Hypothetical Taxonomic Unit
1 basic (defined) 4.41 Indel
1 basic (defined) 4.44 Leaf node
1 basic (defined) 4.48 Monophyly
1 basic (defined) 4.49 Most Recent Common Ancestor
1 basic (defined) 4.50 MRCA
1 basic (defined) 4.55 Network
1 basic (defined) 4.59 Operational Taxonomic Unit
1 basic (defined) 4.6 Bifurcation
1 basic (defined) 4.62 OTU
1 basic (defined) 4.63 Outgroup
1 basic (defined) 4.68 Phylogenetic Tree
1 basic (defined) 4.69 Phylogenetic Tree Topology
1 basic (defined) 4.7 Bipartition
1 basic (defined) 4.73 Polymorphism
1 basic (defined) 4.75 Primitive
1 basic (defined) 4.8 Bootstrap Support
1 basic (defined) 4.83 Root
1 basic (defined) 4.87 State
1 basic (defined) 4.9 Branch
1 basic (defined) 4.90 Subtree
1 basic (defined) 4.95 Taxon
1 basic (defined) 4.96 Taxonomic Rank
1 basic (defined) 4.98 Terminal Node
1 basic (defined) 4.99 Topology
1 basic (undefined) 4.2 Basal
1 basic (undefined) 4.25 lineage
1 basic (undefined) 4.27 Missing Data
1 basic (undefined) 4.29 Polytomy
1 basic (undefined) 4.42 Unrooted
2 external (defined) 4.60 Organismal Taxonomy
2 external (defined) 4.77 Rank
2 external (defined) 4.86 Species Tree
2 external (defined) 4.97 Taxonomy
2 external (undefined) 4.16 Family alignment
2 external (undefined) 4.37 Sequence Family
2 external (undefined) 4.38 Species
2 transformations (defined) 4.101 Transition, disambiguation
2 transformations (defined) 4.102 Transition Model
2 transformations (defined) 4.14 Clade
2 transformations (defined) 4.17 Convergence
2 transformations (defined) 4.18 Convergent Evolution
2 transformations (defined) 4.2 Analogy
2 transformations (defined) 4.20 Deletion
2 transformations (defined) 4.28 Evolutionary Transition
2 transformations (defined) 4.34 HGT
2 transformations (defined) 4.38 Horizontal Gene Transfer (HGT)
2 transformations (defined) 4.42 Insertion
2 transformations (defined) 4.43 Lateral Gene Transfer
2 transformations (defined) 4.45 LGT
2 transformations (defined) 4.5 Atavism
2 transformations (defined) 4.57 Nucleotide Transition
2 transformations (defined) 4.58 Nucleotide Transversion
2 transformations (defined) 4.70 Phylogeny
2 transformations (defined) 4.79 Reconstruction
2 transformations (defined) 4.80 Replacement
2 transformations (defined) 4.81 Reversion
2 transformations (defined) 4.82 Reversal
2 transformations (defined) 4.88 Step Matrix
2 transformations (defined) 4.89 Substitution
2 transformations (undefined) 4.10 Cost Matrix
2 transformations (undefined) 4.15 Evolutionary history
2 transformations (undefined) 4.18 Gene duplication
2 transformations (undefined) 4.19 Gene loss
2 transformations (undefined) 4.20 Gene tree
2 transformations (undefined) 4.21 Genetic event
2 transformations (undefined) 4.28 Polarity
2 unclassified (defined) 4.24 Distance Matrix
2 unclassified (undefined) 4.12 Distance
3 methods (defined) 4.16 Contrasts
3 methods (defined) 4.25 Dollo Parsimony
3 methods (defined) 4.32 General Time-Reversible Model (GTR)
3 methods (defined) 4.46 Likelihood Method
3 methods (defined) 4.54 Neighbor-Joining Algorithm
3 methods (defined) 4.67 Parsimony Method
3 methods (defined) 4.71 Phylogeny Inference Method
3 methods (defined) 4.78 Reconcile Tree
3 methods (defined) 4.91 Supertree
3 methods (undefined) 4.22 Independent Contrasts Method
3 methods (undefined) 4.23 Invariants
3 methods (undefined) 4.26 minimum evolution
3 methods (undefined) 4.4 Coalescent
3 methods (undefined) 4.43 UPGMA
3 methods (undefined) 4.6 Compatibility
3 methods (undefined) 4.7 Consensus Tree
3 patterns (defined) 4.36 Homoplasy
3 patterns (defined) 4.37 Holophyly
3 patterns (defined) 4.61 Orthology
3 patterns (defined) 4.64 Parallel Evolution
3 patterns (defined) 4.65 Paralogy
3 patterns (defined) 4.66 Paraphyly
3 patterns (defined) 4.72 Plesiomorphy
3 patterns (defined) 4.74 Polyphyly
3 patterns (defined) 4.92 Symplesiomorphy
3 patterns (defined) 4.93 Synapomorphy
3 patterns (undefined) 4.35 Reticulate Evolution
3 popgen (defined) 4.1 Allele Fixation
3 popgen (defined) 4.19 CpG Bias
3 popgen (defined) 4.26 Drift
3 popgen (defined) 4.29 Fixation
3 popgen (defined) 4.51 Mutation
3 popgen (defined) 4.52 Mutation Bias
3 popgen (defined) 4.53 Natural Selection
3 popgen (defined) 4.56 Neutral
3 popgen (defined) 4.76 Random Genetic Drift
3 popgen (defined) 4.84 Selection
3 popgen (undefined) 4.30 Population
3 popgen (undefined) 4.41 Transition-Transversion Bias
3 popgen (undefined) 4.44 Variation
3 unclassified (defined) 4.33 Genome Hypothesis
3 unclassified (defined) 4.47 Molecular Clock
3 unclassified (defined) 4.85 Silent
3 unclassified (defined) 4.94 Synonymous
3 unclassified (undefined) 4.1 Anagenesis
3 unclassified (undefined) 4.11 Decay Index
3 unclassified (undefined) 4.13 dN/dS
3 unclassified (undefined) 4.14 Equilibrium State Frequencies
3 unclassified (undefined) 4.17 GC/AT pressure
3 unclassified (undefined) 4.24 Isochore
3 unclassified (undefined) 4.3 Cladogenesis
3 unclassified (undefined) 4.31 Positive Selection
3 unclassified (undefined) 4.32 Radiation
3 unclassified (undefined) 4.33 Radical
3 unclassified (undefined) 4.34 Relative Rate Test
3 unclassified (undefined) 4.36 Selective Constraint
3 unclassified (undefined) 4.39 Stasis
3 unclassified (undefined) 4.40 Star Tree
3 unclassified (undefined) 4.45 Xenology
3 unclassified (undefined) 4.5 Codon Usage
3 unclassified (undefined) 4.8 Conservative
3 unclassified (undefined) 4.9 Constraints, disambiguation