Difference between revisions of "CDAO"

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(Telecon, 7 March, 2007)
(Telecon, 7 March, 2007)
Line 21: Line 21:
 
present: Francisco Prodoscimi, Julie Thompson, Enrico Pontelli, Arlin Stoltzfus
 
present: Francisco Prodoscimi, Julie Thompson, Enrico Pontelli, Arlin Stoltzfus
  
* What activities to do before the meeting?  
+
What activities to do before the meeting?  Plan for development?  
* Test cases  
+
# represent 4 simple test cases  
 
** nt alignment plus tree
 
** nt alignment plus tree
 
** prot alignment plus tree
 
** prot alignment plus tree
 
** kinases with inhibitor sensitivity
 
** kinases with inhibitor sensitivity
 
** worm morphologies
 
** worm morphologies
* operations with reasoning
+
# carry out operations with reasoning
 
** set and logic operations on characters and OTUs
 
** set and logic operations on characters and OTUs
** clade selection
+
** clade selection
* mapping to representations
+
** other? 
 +
# map ontology to other representations
 
** NEXUS
 
** NEXUS
 
** neXML
 
** neXML
**
+
 
* what is the scope?  
+
Other issues for meeting and for paper
* How to integrate with other ontologies?  
+
# what is the scope?  
 +
# How to integrate with other ontologies?  
 
** table from 'related artefacts' exercise  
 
** table from 'related artefacts' exercise  
 
** genetic code as an example
 
** genetic code as an example
 +
 +
Next meeting
 +
* telecon, 14 March, 10:00 EST (GM===
 +
* agenda
 +
** nt and prot test data sets (arlin)
 +
** protege demo (brandon)
  
 
===another meeting===
 
===another meeting===

Revision as of 12:04, 7 March 2008

Comparative Data Analysis Ontology

The material previously on this page has been moved to CDAOManuscript.

This page is for ongoing work and contains links to supporting docs, past work, and sub-topics.

Test Data Sets

Initial Implementation

Evaluation

Meeting Notes

Telecon, 7 March, 2007

present: Francisco Prodoscimi, Julie Thompson, Enrico Pontelli, Arlin Stoltzfus

What activities to do before the meeting? Plan for development?

  1. represent 4 simple test cases
    • nt alignment plus tree
    • prot alignment plus tree
    • kinases with inhibitor sensitivity
    • worm morphologies
  1. carry out operations with reasoning
    • set and logic operations on characters and OTUs
    • clade selection
    • other?
  1. map ontology to other representations
    • NEXUS
    • neXML

Other issues for meeting and for paper

  1. what is the scope?
  2. How to integrate with other ontologies?
    • table from 'related artefacts' exercise
    • genetic code as an example

Next meeting

  • telecon, 14 March, 10:00 EST (GM===
  • agenda
    • nt and prot test data sets (arlin)
    • protege demo (brandon)

another meeting