Difference between revisions of "Data Resources"

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(TreeFam)
(Hovergen, hogenom)
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===Hovergen, hogenom===
 
===Hovergen, hogenom===
 
[http://pbil.univ-lyon1.fr//search/query_fam.php Hovergen], [http://pbil.univ-lyon1.fr/databases/hogenom.php hogenom]
 
[http://pbil.univ-lyon1.fr//search/query_fam.php Hovergen], [http://pbil.univ-lyon1.fr/databases/hogenom.php hogenom]
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* hovergen 1994 paper cited '''157''' times
  
 
=== organism-centered===
 
=== organism-centered===
  
 
organism-centered gene-family databases, e.g., for plasmodium
 
organism-centered gene-family databases, e.g., for plasmodium

Revision as of 15:01, 22 May 2008

Quick analysis of data resources to target for interop hackathon

The idea is that each of these resources has comparative data that we might want to make interoperable.

questions to ask for each resource

Resources

Pandit

Pandit

TreeBase

TreeBaseII has the kind of granular schema that would be a good challenge to try to accommodate using cdao. What is missing from cdao (and nexml) is the notion of a "study" with various types of metadata, including publication/reference metadata (which is somewhat dc-like).

pPOD

pPOD (not really a data resource, its a db tech project led by computer scientists)

TreeFam

TreeFam

  • citations for 2006 paper: 36

Hovergen, hogenom

Hovergen, hogenom

  • hovergen 1994 paper cited 157 times

organism-centered

organism-centered gene-family databases, e.g., for plasmodium