Difference between revisions of "Database Interop Hackathon/Implementations"

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(Current implementations)
(Current implementations)
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<td>??</td>
 
<td>??</td>
 
<td>Java</td>
 
<td>Java</td>
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<td>[http://www.ubio.org uBio]</td>
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<td>[[ConceptGlossary#Taxon]], [[ConceptGlossary#Taxonomic_Rank]], [[ConceptGlossary#Organismal_Taxonomy]]</td>
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<td>PHP</td>
 
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Revision as of 13:39, 25 September 2008

Summary

This page discusses potential target implementations that demonstrate the goals for the Evolutionary Database Interop Hackathon, to be held at NESCent in December 2008.

Current implementations

ResourceExportable objectsImplementation language
Tree of Life ConceptGlossary#Species_Tree Java
pPOD ?? Java
uBio ConceptGlossary#Taxon, ConceptGlossary#Taxonomic_Rank, ConceptGlossary#Organismal_Taxonomy PHP
TimeTree ConceptGlossary#Species_Tree PHP
PhyloFacts ConceptGlossary#Transition_Model, ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment PHP
MorphBank ConceptGlossary#Character-State_Data_Matrix PHP, Java, JavaScript
MorphoBank ConceptGlossary#Character-State_Data_Matrix PHP, Flash/ActionScript
PhylomeDB ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment JavaScript, Python
PhyloTA ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
TreeFam ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
Pandit ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
MicrobesOnline ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment CGI (=Perl?)
HoVerGen ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment CGI (=Perl?), PHP

Use cases

Requirements

Deliverables