Difference between revisions of "Database Interop Hackathon/Implementations"

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This page discusses potential target implementations that demonstrate the goals for the Evolutionary [[Database Interop Hackathon]], to be held at NESCent in December 2008.
 
This page discusses potential target implementations that demonstrate the goals for the Evolutionary [[Database Interop Hackathon]], to be held at NESCent in December 2008.
 
= Current implementations =
 
= Current implementations =
 +
<table>
 +
<tr><th align="left">Resource</th><th align="left">Exportable objects</th><th align="left">Implementation language</th></tr>
 +
 +
<tr>
 +
<td>[http://tolweb.org/ Tree of Life]</td>
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<td>[[ConceptGlossary#Species_Tree]]</td>
 +
<td>Java</td>
 +
</tr>
 +
 +
<tr>
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<td>[http://timetree.org/index.php TimeTree]</td>
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<td>[[ConceptGlossary#Species_Tree]]</td>
 +
<td>PHP</td>
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</tr>
 +
 +
<tr>
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<td>[http://phylodata.seas.upenn.edu pPOD]</td>
 +
<td>??</td>
 +
<td>Java</td>
 +
</tr>
 +
 +
<tr>
 +
<td>[http://www.morphbank.net MorphBank]</td>
 +
<td>[[ConceptGlossary#Character-State_Data_Matrix]]</td>
 +
<td>PHP, Java, JavaScript</td>
 +
</tr>
 +
 +
<tr>
 +
<td>[http://loco.biosci.arizona.edu/pb/ PhyloTA]</td>
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<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
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<td>Perl</td>
 +
</tr>
 +
 +
<tr>
 +
<td>[http://phylomedb.bioinfo.cipf.es/index.html PhylomeDB</td>
 +
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
 +
<td>python</td>
 +
</tr>
 +
 +
</table>
 +
 
= Use cases =
 
= Use cases =
 
= Requirements =
 
= Requirements =

Revision as of 14:51, 24 September 2008

Summary

This page discusses potential target implementations that demonstrate the goals for the Evolutionary Database Interop Hackathon, to be held at NESCent in December 2008.

Current implementations

ResourceExportable objectsImplementation language
Tree of Life ConceptGlossary#Species_Tree Java
TimeTree ConceptGlossary#Species_Tree PHP
pPOD ?? Java
MorphBank ConceptGlossary#Character-State_Data_Matrix PHP, Java, JavaScript
PhyloTA ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
[http://phylomedb.bioinfo.cipf.es/index.html PhylomeDB ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment python

Use cases

Requirements

Deliverables