Difference between revisions of "Database Interop Hackathon/Implementations"

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(Current implementations)
(Current implementations)
Line 8: Line 8:
 
<td>[http://tolweb.org/ Tree of Life]</td>
 
<td>[http://tolweb.org/ Tree of Life]</td>
 
<td>[[ConceptGlossary#Species_Tree]]</td>
 
<td>[[ConceptGlossary#Species_Tree]]</td>
 +
<td>Java</td>
 +
</tr>
 +
 +
<tr>
 +
<td>[http://phylodata.seas.upenn.edu pPOD]</td>
 +
<td>??</td>
 
<td>Java</td>
 
<td>Java</td>
 
</tr>
 
</tr>
Line 18: Line 24:
  
 
<tr>
 
<tr>
<td>[http://phylodata.seas.upenn.edu pPOD]</td>
+
<td>[http://phylogenomics.berkeley.edu PhyloFacts]</td>
<td>??</td>
+
<td>[[ConceptGlossary#Transition_Model]], [[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
<td>Java</td>
+
<td>PHP</td>
 
</tr>
 
</tr>
  
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<td>[[ConceptGlossary#Character-State_Data_Matrix]]</td>
 
<td>[[ConceptGlossary#Character-State_Data_Matrix]]</td>
 
<td>PHP, Flash/ActionScript</td>
 
<td>PHP, Flash/ActionScript</td>
</tr>
 
 
<tr>
 
<td>[http://loco.biosci.arizona.edu/pb/ PhyloTA]</td>
 
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
 
<td>Perl</td>
 
 
</tr>
 
</tr>
  
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<tr>
 
<tr>
<td>[http://phylogenomics.berkeley.edu PhyloFacts]</td>
+
<td>[http://loco.biosci.arizona.edu/pb/ PhyloTA]</td>
<td>[[ConceptGlossary#Transition_Model]], [[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
+
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
<td>PHP</td>
+
<td>Perl</td>
 
</tr>
 
</tr>
  
Line 60: Line 60:
  
 
<tr>
 
<tr>
<td>[http://www.microbesonline.com MicrobesOnline]</td>
+
<td>[http://www.ebi.ac.uk/goldman-srv/pandit/ Pandit]</td>
 
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
 
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
<td>CGI (=Perl?)</td>
+
<td>Perl</td>
 
</tr>
 
</tr>
  
 
<tr>
 
<tr>
<td>[http://www.ebi.ac.uk/goldman-srv/pandit/ Pandit]</td>
+
<td>[http://www.microbesonline.com MicrobesOnline]</td>
 
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
 
<td>[[ConceptGlossary#Phylogenetic_Tree]], [[ConceptGlossary#Family_alignment]]</td>
<td>Perl</td>
+
<td>CGI (=Perl?)</td>
 
</tr>
 
</tr>
  

Revision as of 19:38, 24 September 2008

Summary

This page discusses potential target implementations that demonstrate the goals for the Evolutionary Database Interop Hackathon, to be held at NESCent in December 2008.

Current implementations

ResourceExportable objectsImplementation language
Tree of Life ConceptGlossary#Species_Tree Java
pPOD ?? Java
TimeTree ConceptGlossary#Species_Tree PHP
PhyloFacts ConceptGlossary#Transition_Model, ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment PHP
MorphBank ConceptGlossary#Character-State_Data_Matrix PHP, Java, JavaScript
MorphoBank ConceptGlossary#Character-State_Data_Matrix PHP, Flash/ActionScript
PhylomeDB ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment JavaScript, Python
PhyloTA ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
TreeFam ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
Pandit ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment Perl
MicrobesOnline ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment CGI (=Perl?)
HoVerGen ConceptGlossary#Phylogenetic_Tree, ConceptGlossary#Family_alignment CGI (=Perl?), PHP

Use cases

Requirements

Deliverables