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  • #*** need to convert OWL ontos to OBO format (see http://www.berkeleybop.org/obo-conv.cgi) #** need to convert OWL ontos to OBO (see http://www.berkeleybop.org/obo-conv.cgi)
    7 KB (979 words) - 15:50, 10 March 2009
  • * '''[[Media:nescent_mao.ppt|MAO]]''' Julie Thompson describes the OBO-integrated Multiple Alignment Ontology (MAO, which operates on DNA, RNA, AA
    25 KB (3,791 words) - 01:39, 3 March 2009
  • ...s that were existing or in development, e.g., NeXML. We also surveyed the OBO repository, carried out web searches with key words, and scanned related jo ||[http://obofoundry.org/ro/ OBO REL]
    6 KB (928 words) - 00:59, 9 March 2009
  • ...et the following requirements: cover existing file formats, integrate with OBO, provide an API to converse between ontology and legacy files. The MAO ontology links to OBO, which she goes on to introduce. She outlines the reasons for the developme
    26 KB (3,981 words) - 01:37, 3 March 2009
  • * specification : OBO format, OWL conversion available via OBO ...ucture, function information are described as sequence features. Links to OBO ontologies (GO, SO, InterPro, NCBI taxonomy, etc.) are possible.
    1 KB (143 words) - 14:05, 10 March 2009
  • * open : will be available on OBO site
    656 bytes (79 words) - 01:27, 3 March 2009
  • * specification : OBO format, OWL conversion available via OBO * open : yes, available on OBO site
    491 bytes (58 words) - 01:26, 3 March 2009
  • ...pects of CDAO are particularly suitable to OWL, that cannot be modelled in OBO format? ...OBO allows for relations that are cyclic. This is from an introduction to OBO (http://oboedit.org/docs/html/An_Introduction_to_OBO_Ontologies.htm):
    66 KB (10,405 words) - 15:58, 23 March 2011
  • ...bility with the most widely used biological ontologies, available from the OBO website (http://obofoundry.org/). ...ionships between them. The draft ontology will then be registered with the OBO collection of ontologies, which provides a means for distribution. CDAO wil
    11 KB (1,666 words) - 15:34, 12 March 2009
  • * inclusion of CDAO in OBO
    29 KB (4,501 words) - 01:43, 3 March 2009
  • * the [http://www.molevol.org/miapa.obo miapa.obo] ontology (actually a translated version of the OWL source on sourceforge) *** (good) Phenote '''can''' implement restrictions via the use of OBO "categories" (a kind of tag; see below)
    19 KB (2,789 words) - 16:03, 12 March 2009
  • ** of cdao from OBO or sourceforge
    14 KB (1,948 words) - 16:11, 9 March 2009
  • #** each OTU annotated with dict references to OBO id, OBO specimens, OBO collections
    3 KB (384 words) - 15:52, 12 March 2009
  • ...kout*/obo/obo/ontology/phenotype/infectious_disease.obo infectious disease OBO]. This ontology would interact with another HIV-specific sequence/phylogene
    5 KB (689 words) - 15:36, 12 March 2009
  • :* ''Some progress has been made on this front by [http://www.obofoundry.org/ OBO], in the [http://www.obofoundry.org/cgi-bin/detail.cgi?id=infectious_diseas * [http://www.obofoundry.org/ OBO]
    29 KB (4,320 words) - 15:48, 12 March 2009
  • ...#foo" property="cdao:has_Taxonomy_Reference" rdf:resource="http://purl.org/obo/owl/TTO#TTO_1054206"/> <dict xmlns:obi="http://purl.obofoundry.org/obo/obi.owl"
    19 KB (2,885 words) - 15:03, 26 October 2009
  • ** Basic OBO [http://ontology.insectmuseum.org/index.php/Main_Page Ontology] import and [[Category:OBO]]
    1,004 bytes (136 words) - 23:32, 12 March 2009
  • ...] and builds on [http://www.phenote.org/ Phenote] and [http://oboedit.org/ OBO-Edit]. [[Jim]] Balhoff is the lead developer of Phenex.
    831 bytes (118 words) - 17:20, 9 March 2009
  • This uses the CDAO predicate "has_Taxonomy_Reference" and the objects are OBO OWLs for TTO and NCBI: <cdao:has_Taxonomy_Reference rdf:resource="http://purl.org/obo/owl/TTO#TTO_1054206"/>
    2 KB (220 words) - 16:06, 12 March 2009