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  • ...serialization protocol and into a file standard definition such as an XML Schema. However, the requirements of this ontology were not clearly established, a ...dard implements a formal [[General Ontology|ontology]] and is defined by a schema (as in [http://www.phyloxml.org/ phyloxml]), such that instance documents c
    44 KB (6,733 words) - 00:38, 24 March 2009
  • ...ry expressive, but not terse. The conciseness of Lisp syntax (relative to XML) helps constrain the length of grammar descriptions. Not everyone finds th ...td><td>XML</td><td>AML is an Algebraic Markup Language (drawing on SML and XML) described by [[Media:EzechukwuMaros2003.pdf|Ezechukwu and Maros, 2003]], w
    30 KB (4,508 words) - 15:59, 12 March 2009
  • * (3) Developing a next-generation data exchange standard (e.g., XML of NEXUS) ** the next data exchange standard format (e.g., XML-ified NEXUS)
    17 KB (2,654 words) - 11:27, 14 May 2009
  • ...e problems. Considerable progress was made over the summer on "nexml", an XML-based successor to [https://www.nescent.org/wg_phyloinformatics/NEXUS_Speci ...et by means of a mapping between the formal ontology (OWL) terms and (XML) schema data types.
    25 KB (3,791 words) - 01:39, 3 March 2009
  • ...from [[TreeBASE]] and what is needed for a new data format or ontology or schema.'' The [[TreeBASE]] schema (ER and OM) is not especially exciting or unexpected. It's largely [[NEXUS]
    26 KB (3,981 words) - 01:37, 3 March 2009
  • * Chado is a relational schema that underlies many GMOD installations. * It includes a mapping to an XML representation
    2 KB (352 words) - 01:12, 3 March 2009
  • XML Schema and DTD Arbitrary data (encoded in XML) can be attached to nodes, edges, and graphs. In addition, a specific locat
    1 KB (150 words) - 01:19, 3 March 2009
  • <xml> </xml>
    66 KB (10,405 words) - 15:58, 23 March 2011
  • ...equired attributes and child elements of the objects and serialize them to xml. ...ser, to facilitate parsing of networks and character matrices, and develop xml writability by expanding the Bio::Phylo::XMLWritable class, along the same
    29 KB (4,501 words) - 01:43, 3 March 2009
  • ...ontology (here is the [http://www.mygrid.org.uk/ontology/ owl file in RDF-XML] and here is an image of part of the class hierarchy: [[image:Mygrid_servic #* proposal of initial version of DB schema
    19 KB (2,789 words) - 16:03, 12 March 2009
  • .../www.phylo.org/sub_sections/databases TreeBaseII] has the kind of granular schema that would be a good challenge to try to accommodate using cdao. *#* CDAO to providing constraining vocabulary for nexml schema
    14 KB (1,948 words) - 16:11, 9 March 2009
  • ...t, particularly in learning and finding placing to contribute; (B) created XML schemas, NeXML formatting for LANL HIV data and was able to deliver data fr ...ta accessible. In particular, need to make it a top priority to update the schema at www.nexml.org/nexml/1.0 to comply with the RDF/a-based standard. Two SoC
    34 KB (5,104 words) - 18:14, 29 June 2009
  • ...erMine], GUS, or any other widely used general purpose biological database schema. I picked Chado, because that's the one I know best. Dave Clements'' * [[GMOD]]'s [http://gmod.org/wiki/Chado Chado schema] is very good at sequence and ontologies, supports basic phylogeny and comp
    29 KB (4,320 words) - 15:48, 12 March 2009
  • ...provides clearly defined ways of representing such data. Furthermore, the schema ties the semantics of data to [[CDAO]] via references to ontology terms usi ...r anything that a user might wish to say, but that would lead to a bloated schema redundant with other artifacts. Another approach would be to allow free-fo
    19 KB (2,885 words) - 15:03, 26 October 2009
  • ...p://www.nexml.org NeXML], an [http://www.nexml.org/nexml/xsd/nexml.xsd xml schema] with bindings in [http://www.nexml.org/nexml/perl/ perl], [http://www.nexm ...//www.nexml.org/nexml/xsd/nexml.xsd] and a validation service against this schema[http://www.nexml.org/nexml/validator]
    37 KB (5,305 words) - 14:56, 15 June 2009
  • === Does NeXML have a schema? === Yes. There is an [http://nexml-dev.nescent.org/nexml/html/doc/schema-1/ XML Schema].
    2 KB (285 words) - 16:05, 12 March 2009
  • ...ttp://morphobank.geongrid.org/index.php?g=about&s=tech MorphoBank database schema] ** Can the [[Semantic API for CDAO Subgroup]] verify that xml-rdf-xml transition works. (???)
    9 KB (1,307 words) - 20:34, 27 March 2009
  • the schema: http://nexml-dev.nescent.org/1.0/nexml.xsd (''Use dev server for now.'' -- ...trunk/cdao-api/xslt/nexml2cdao.xsl nexml2cdao.xsl] nexml-instance-document.xml > cdao-instance-document.rdf</code>
    12 KB (1,811 words) - 17:34, 13 March 2009
  • * go from xml to CDAO, then use reasoner ** a walk throught the schema and its main elements (uses [[NeXML | nexml project page]])
    5 KB (657 words) - 05:29, 20 May 2009