Difference between revisions of "TreeBase Information"

From Evolutionary Informatics Working Group
Jump to: navigation, search
Line 1: Line 1:
[http://www.phylo.org TreeBase] is a database developed with the stated purposes of archiving published data sets and supporting meta-analyses. 
#REDIRECT [[TreeBASE#TreeBASE Information]]
We are mainly interested in a current effort to develop a [http://www.phylo.org/treebase_pdf_docs new schema for TreeBase II] (these are images of the schema; Arlin has UML and XMI versions from the developers that he can share within the evoinfo group).
# The specification language is SQL
# The scope covers character data, trees, and some analysis information; essentially it is a large subset of what is covered in a NEXUS file
# Within this scope, the schema has similar limitations to NEXUS (poor support for specifying models and complex data sets)
# Development is controlled by the administrators
# We are not aware of a versioning policy.
# We are not aware of a conformance policy.  The administrators are loose about the NEXUS format for uploading data to TreeBase.  In the past they have corrected invalid files received from users.
# TreeBase is actively used and we expect that the TreeBase II update will take place eventually
# TreeBase is widely used for archiving in some areas of the systematics community.  It has not been widely used for meta-analyses, to our knowledge.  Currently the interface is very limited.

Latest revision as of 23:55, 2 March 2009