CDAO term request

From Evolutionary Informatics Working Group
Jump to: navigation, search

How to make a request

  • try to define the concept; see if its defined already in the Concept Glossary
  • what kind of thing is it? what are some related (but different) concepts?
  • what are some uses for this concept?
  • are there examples of token data that would be useful to clarify this?

Requests with suggested resolutions

function property

taxonomy reference for OTU

specimen reference

literature reference

Requests without a suggested resolution

data set or "study" concept

  • definition: concept describing the chunk of information for an analysis, typically corresponding to a single NEXUS or nexml file, and including OTUs, data, tree, methods, etc
  • uses: need to allow multiple studies in context; need to ask (for instance) if study has fully_resolved species_tree
  • related concepts:
    • possibly like OBI:IAO_0000100
    • like the "study" concept in the TreeBase II schema
  • comment: I think "data set" and "study" are two different concepts.

speciation and duplication concepts to annotate tree nodes

  • definition: the outcome of the reconcile tree operation is a reconciled tree in which each node represents either a duplication or a speciation event
  • related concepts: orthology and paralogy
  • uses
    • use: functional annotation (genomics)
    • use: molecular evolutionary analysis
  • links to resources

your request here

  • definition:
  • related concepts:
  • uses
    • one use:
    • another use:
  • links to resources
    • one resource
    • another resource

template, don't delete

  • definition:
  • related concepts:
  • uses
    • one use:
    • another use:
  • links to resources
    • one resource
    • another resource